Code
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Some of the developed packages can be cloned from GitHub
| Name | Link | Summary |
|---|---|---|
| ctDNA
2020
|
Python package to model ctDNA shedding and cancer early detection (see Avanzini et al, bioRxiv 2020) | |
| rootdiversity
2020
|
Jupyter notebooks to calculate the root diversity score (RDS; see Reiter et al, Nature Genetics 2020) | |
| LiFD
2019
|
Python package to predict likely functional driver (LiFD) mutations | |
| Treeomics
2016
|
Python package to reconstruct metastatic seeding patterns | |
| Biological Auctions
2015
|
Python package to study the evolutionary dynamics in biological all-pay auctions | |
| TTP
2013
|
Java-based tool providing a quantitative framework to investigate tumor progression |