Some of the developed packages can be cloned from GitHub
| Name | Link | Summary |
|---|---|---|
| ctDNA 2020 | PyPI package | Python package to model ctDNA shedding and cancer early detection (see Avanzini et al, bioRxiv 2020) |
| rootdiversity 2020 | repository | Jupyter notebooks to calculate the root diversity score (RDS; see Reiter et al, Nature Genetics 2020) |
| LiFD 2019 | repository | Python package to predict likely functional driver (LiFD) mutations |
| Treeomics 2016 | repository | Python package to reconstruct metastatic seeding patterns |
| Biological Auctions 2015 | repository | Python package to study the evolutionary dynamics in biological all-pay auctions |
| TTP 2013 | website | Java-based tool providing a quantitative framework to investigate tumor progression |
